staff

Szabolcs Zakany

Postdoctoral fellow in Artificial & Natural Evolution

  • T: +41 22 379 30 45
  • office 4055a (Sciences III)

  • The Unreasonable Effectiveness of Reaction Diffusion in Vertebrate Skin Color Patterning. Annu Rev Cell Dev Biol 2023 Oct;39():145-174. 10.1146/annurev-cellbio-120319-024414.

    abstract

    In 1952, Alan Turing published the reaction-diffusion (RD) mathematical framework, laying the foundations of morphogenesis as a self-organized process emerging from physicochemical first principles. Regrettably, this approach has been widely doubted in the field of developmental biology. First, we summarize Turing's line of thoughts to alleviate the misconception that RD is an artificial mathematical construct. Second, we discuss why phenomenological RD models are particularly effective for understanding skin color patterning at the meso/macroscopic scales, without the need to parameterize the profusion of variables at lower scales. More specifically, we discuss how RD models () recapitulate the diversity of actual skin patterns, () capture the underlying dynamics of cellular interactions, () interact with tissue size and shape, () can lead to ordered sequential patterning, () generate cellular automaton dynamics in lizards and snakes, () predict actual patterns beyond their statistical features, and () are robust to model variations. Third, we discuss the utility of linear stability analysis and perform numerical simulations to demonstrate how deterministic RD emerges from the underlying chaotic microscopic agents.

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  • Somitic positional information guides self-organized patterning of snake scales. Sci Adv 2023 Jun;9(24):eadf8834. PMC10266723. 10.1126/sciadv.adf8834.

    abstract

    Two influential concepts in tissue patterning are Wolpert's positional information and Turing's self-organized reaction-diffusion (RD). The latter establishes the patterning of hair and feathers. Here, our morphological, genetic, and functional-by CRISPR-Cas9-mediated gene disruption-characterization of wild-type versus "scaleless" snakes reveals that the near-perfect hexagonal pattern of snake scales is established through interactions between RD in the skin and somitic positional information. First, we show that ventral scale development is guided by hypaxial somites and, second, that ventral scales and epaxial somites guide the sequential RD patterning of the dorsolateral scales. The RD intrinsic length scale evolved to match somite periodicity, ensuring the alignment of ribs and scales, both of which play a critical role in snake locomotion.

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  • Lizard Skin Patterns and the Ising Model. Phys Rev Lett 2022 Jan;128(4):048102. 10.1103/PhysRevLett.128.048102.

    abstract

    The ocellated lizard (Timon lepidus) exhibits an intricate skin color pattern made of monochromatic black and green skin scales, whose dynamics of color flipping are known to be well modeled by a stochastic cellular automaton. We show that the late-time probability distribution of the pattern corresponds to the canonical probability distribution of the antiferromagnetic Ising model and can be generated by dynamics different from the commonly-used Glauber. We comment on skin scale patterns generated by the Ising model on the triangular lattice in the low-temperature limit.

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