Publications

The understanding of cultural dynamics at work at the end of the Final Pleistocene in West Africa suffers from a significant lack of excavated and dated sites, particularly in the Sahelian and Sudanian ecozones. While the Later Stone Age shows varied behavioral developments in different parts of the continent, the chrono-cultural framework of this period remains largely unknown in West Africa. We report on archaeological, geomorphological, and chronological research on two Final Pleistocene Later Stone Age sites in the Falémé Valley, eastern Senegal. Optically stimulated luminescence ages place the site of Toumboura I-2017 between 17 ± 1 and 16 ± 1 ka and the Ravin de Sansandé site between 13 ± 1 ka and 12 ± 1.1 ka. The excavated lithics show typical Later Stone Age industries, characterized by chaînes opératoires of core reduction mainly producing flakes and bladelets as well as blades and laminar flakes. Segments dominate the toolkits but a few backed bladelets and end-scrapers on flake blanks were recognized. Local raw materials were used, with a preference for chert and quartz, as well as greywacke. These Later Stone Age lithic assemblages are the oldest known in Senegal so far and add to the small number of sites known in West Africa for this period, which are mainly located farther south, in sub-tropical ecozones. The Later Stone Age sites of the Falémé Valley are contemporaneous with typical Middle Stone Age technologies in Senegal dated to at least the Pleistocene/Holocene transition. Our results thus provide new archaeological evidence highlighting the complex cultural processes at work during the Final Pleistocene in West Africa.

Molecular tools are an important part to study the phylogeny and taxonomy of foraminifera. In the present chapter, isolation and extraction of these single-celled organisms will be described. Furthermore, the amplification of the 18S barcoding fragment in foraminifera and detection of amplified products by agarose gel electrophoresis will be detailed.

Fossil evidence suggests that ray-finned fishes (Actinopterygii) diversified greatly after the largest mass extinction event at the Permian–Triassic boundary. This radiation resulted in a diversity peak in the Middle Triassic, which is manifested in diverse feeding specializations, especially among small-bodied Neopterygii. We present new material from an early Spathian (Early Triassic) outcrop in northern Dobrogea, southeast Romania. The material includes isolated jaw and palatal bones that evidently belong to a single individual, a durophagous actinopterygian, and isolated scales referred to the same taxon. A systematic evaluation of this material indicates affinities with †Polzbergiidae, and provides a first glimpse of internal aspects of the feeding apparatus of that group. A pair of ectopterygoids with crushing dentition show a well-developed lateral process, a feature that was previously proposed to be a synapomorphy uniting Cladistia (bichirs) with the Triassic †Scanilepiformes. The recognition of this structure in various Triassic ray-fins (summarized herein) indicates that it was probably widespread among stem neopterygians. The new material belongs to a large individual with a heterodont dentition, therefore representing the earliest large, specialized, durophagous neopterygian. It increases the group's morphological diversity in the Spathian, and hints at an earlier trophic diversification after the mass extinction. Based on new data, we analyse changes in body size of bony fishes through the Early and Middle Triassic. Current evidence suggests that body size distribution remained skewed towards larger sizes in the late Early Triassic, and that the diversification of small-bodied stem neopterygians had not yet been in full swing.

Xenophyophores are large, agglutinated foraminifera that dominate the benthic megafauna in some parts of the deep sea. Here, we describe an assemblage of largely fragmentary specimens from the Clarion-Clipperton Zone (CCZ), an area of the eastern abyssal Pacific hosting large, commercially significant deposits of polymetallic nodules. We recognised 18 morphospecies of which eight yielded DNA sequences. These include two new genera and three new species, Claraclippia seminuda gen. & sp. nov., Stereodiktyoma mollis gen. & sp. nov., and Aschemonella tani sp. nov., three that are assigned to known species, Abyssalia foliformis, Aschemonella monilis and Shinkaiya contorta, and two assigned to open nomenclature forms Abyssalia aff. foliformis and Stannophyllum aff. granularium. An additional ten forms are represented only by morphology. The following seven are placed in known genera, species and open-nomenclature forms: Aschemonella? sp., Homogammina sp., Psammina multiloculata, P. aff. multiloculata, P. aff. limbata form 1 sensu Gooday et al., 2018, P. aff. limbata form 2 sensu Gooday et al., 2018, and Stannophyllum spp. The other three could not be identified to genus level. This new collection brings the total of described and undescribed species and morphotypes from the CCZ to 27 and 70, respectively, reinforcing the already high diversity of xenophyophores known from this part of the Pacific.

Observations in 2022 of intertidal and subtidal foraminiferal faunas at four localities along the central-eastern side of Vancouver Island, British Columbia, Canada, and molecular analyses have documented the first occurrence of the nonindigenous Asian species Ammonia confertitesta Zheng in the northwestern Pacific Ocean. The species was present at three of these localities: Davis Lagoon south of Ladysmith (4% in the lagoon and 49% on the beach) and 0.6% in Nanaimo Harbor. The vector of introduction is thought to be the release of ballast water and associated sediment. These releases probably occurred in the Port of Vancouver, which were then transported by means of the cyclonic circulation across the Strait of Georgia, or from local anchorages close to the sampling sites. The timing of the introduction is impossible to determine because no stratigraphic record is presently available. However, foraminiferal studies in the late 1980s near the Port of Vancouver that recovered calcareous taxa did not report the presence of this species, nor was it found at 33 sites sampled from 1997 to 1999 throughout the Strait of Georgia.

In some mammals, notably humans, recombination occurs almost exclusively where the protein PRDM9 binds, whereas in vertebrates lacking an intact , such as birds and canids, recombination rates are elevated near promoter-like features. To determine whether PRDM9 directs recombination in nonmammalian vertebrates, we focused on an exemplar species with a single, intact ortholog, the corn snake (). Analyzing historical recombination rates along the genome and crossovers in pedigrees, we found evidence that PRDM9 specifies the location of recombination events, but we also detected a separable effect of promoter-like features. These findings reveal that the uses of PRDM9 and promoter-like features need not be mutually exclusive and instead reflect a tug-of-war that is more even in some species than others.

Reptilian species, particularly snakes and lizards, are emerging models of animal coloration. Here, I focus on the role of the TFEC transcription factor in snake and lizard coloration based on a study on wild-type and piebald ball pythons. Genomic mapping previously identified a TFEC mutation linked to the piebald ball python phenotype. The association of TFEC with skin coloration was further supported by gene-editing experiments in the brown anole lizard. However, novel histological analyses presented here reveal discrepancies between the ball python and the anole TFEC mutants phenotype, cautioning against broad generalizations. Indeed, both wild-type and piebald ball pythons completely lack iridophores, whereas the TFEC anole lizard mutants lose their iridophores compared to the wild-type anole. Based on these findings, I discuss the potential role of the MiT/TFE family in skin pigmentation across vertebrate lineages and advocate the need for developmental analyses and additional gene-editing experiments to explore the reptilian coloration diversity.

During gastrulation, Hox genes are activated in a time-sequence that follows the order of the genes along their clusters. This property, which is observed in all animals that develop following a progressive rostral-to-caudal morphogenesis, is associated with changes in the chromatin structure and epigenetic profiles of Hox clusters, suggesting a process at least partly based on sequential gene accessibility. Here, we discuss recent work on this issue, as well as a possible mechanism based on the surprising conservation in both the distribution and orientation of CTCF sites inside vertebrate Hox clusters.